Cell Line Tissue
Download processed single-cell RNA sequencing data from cell line-derived samples
Dataset Information
Tissue Type
Cell line
Total Cells
23,383
Sample Count
12 samples
Subpopulation Count
5 Subtypes
This dataset contains single-cell RNA sequencing data from established cell lines, providing controlled experimental conditions for studying cellular behavior and gene expression patterns.
Raw Data Files
Raw Data Files
Complete single-cell RNA sequencing data in standard 10X Genomics format
10X Raw Data Package
File: CellLine_10x_raw_package.zip
Format: ZIP
Description: Contains barcodes/features/matrix/metadata in standard 10X format
Download
Barcode File
File: CellLine_barcodes.tsv.gz
Format: TSV.GZ
Description: Contains cell barcode information for each cell in the dataset.
Feature File
File: CellLine_features.tsv.gz
Format: TSV.GZ
Description: Gene features and annotations including gene symbols and IDs.
Matrix File
File: CellLine_matrix.mtx.gz
Format: MTX.GZ
Description: Sparse expression matrix containing gene expression counts.
Metadata File
File: CellLine_metadata.csv.gz
Format: CSV.GZ
Description: Cell-level metadata including annotations and sample information.
Marker Genes
Marker of cell line is published in Zenodo：scHNDB-Tissue Type-Marker Genes（DOI 10.5281/zenodo.19535702）。File name: Cell_line_all_Markers_of_each_subpopulation.xls、Cell_line_top10_Markers_of_each_subpopulation.xls。