Lymph Node Tissue
Download processed single-cell RNA sequencing and spatial transcriptomics data from lymph node tissue samples
Dataset Information
Tissue Type
Lymph node tissue
Total Cells
132,993
Sample Count
43 samples
Subpopulation Count
111 Subtypes
This dataset contains single-cell RNA sequencing data from lymph node tissue samples, providing insights into immune cell organization and function within lymphoid tissue.
Raw Data Files
Raw Data Files
Complete single-cell RNA sequencing data in standard 10X Genomics format
10X Raw Data Package
File: LymphNode_10x_raw_package.zip
Format: ZIP
Description: Contains barcodes/features/matrix/metadata in standard 10X format
Download
Barcode File
File: LymphNode_barcodes.tsv.gz
Format: TSV.GZ
Description: Contains cell barcode information for each cell in the dataset.
Feature File
File: LymphNode_features.tsv.gz
Format: TSV.GZ
Description: Gene features and annotations including gene symbols and IDs.
Matrix File
File: LymphNode_matrix.mtx.gz
Format: MTX.GZ
Description: Sparse expression matrix containing gene expression counts.
Metadata File
File: LymphNode_metadata.csv.gz
Format: CSV.GZ
Description: Cell-level metadata including annotations and sample information.
Marker Genes
Markers of lymph node tissue are published in Zenodo：scHNDB-Tissue Type-Marker Genes（DOI 10.5281/zenodo.19535702）。File name: Lymph_node_All_Markers_of_each_subpopulation.xls、Lymph_node_Top10_Markers_of_each_subpopulation.xls。